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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Human TCF4 C-terminal bHLH domain in Complex with 13-bp Oligonucleotide Containing E-box Sequence

Results of the assignment of 47 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016od3_X_DC1_DA2NANNANT00.65IC05
026od3_X_DA2_DT3BBBBB01860.11BB01
036od3_X_DT3_DA4BBBBB01690.25BB01
046od3_X_DA4_DC5B-ABA05770.14BA05
056od3_X_DC5_DA6BBBBB00550.34BB00
066od3_X_DA6_DC7BBBBB00830.20BB00
076od3_X_DC7_DG8BBBBB00630.37BB00
086od3_X_DG8_DT9BBBBB00780.28BB00
096od3_X_DT9_DG10B12BB04700.18BB04
106od3_X_DG10_DT11BBBBB00800.17BB00
116od3_X_DT11_DA12BBBBB01720.21BB01
126od3_X_DA12_DT13B-ABA05220.29BA05
136od3_W_DA2_DT3B-ABA05820.24BA05
146od3_W_DT3_DA4BBBBB01490.27BB01
156od3_W_DA4_DC5BBBBB01920.14BB01
166od3_W_DC5_DA6BBBBB00650.34BB00
176od3_W_DA6_DC7BBBBB00820.13BB00
186od3_W_DC7_DG8BBBBB00350.47BB00
196od3_W_DG8_DT9BBBBB00830.25BB00
206od3_W_DT9_DG10B12BB04850.18BB04
216od3_W_DG10_DT11BBBBB00840.12BB00
226od3_W_DT11_DA12BBBBB01810.18BB01
236od3_W_DA12_DT13B-ABA01360.23BA01
246od3_Y_DC1_DA2NANNANT00.72IC05
256od3_Y_DA2_DT3BBBBB01730.23BB01
266od3_Y_DT3_DA4BBBBB01710.26BB01
276od3_Y_DA4_DC5BBBBB01870.19BB01
286od3_Y_DC5_DA6BBBBB00650.31BB00
296od3_Y_DA6_DC7BBBBB00840.14BB00
306od3_Y_DC7_DG8BBBBB00520.41BB00
316od3_Y_DG8_DT9BBBBB00790.29BB00
326od3_Y_DT9_DG10B12BB04840.16BB04
336od3_Y_DG10_DT11BBBBB00830.13BB00
346od3_Y_DT11_DA12BBBBB01520.28BB01
356od3_Y_DA12_DT13B-ABA01220.27BA01
366od3_Z_DC1_DA2NANNANT00.76IC05
376od3_Z_DA2_DT3B-ABA05870.22BA05
386od3_Z_DT3_DA4A-BAB03700.44AB03
396od3_Z_DA4_DC5BBBBB00840.22BB00
406od3_Z_DC5_DA6B12BB04720.18BB04
416od3_Z_DA6_DC7BBBBB00800.16BB00
426od3_Z_DC7_DG8BBBBB00370.44BB00
436od3_Z_DG8_DT9BBBBB01720.27BB01
446od3_Z_DT9_DG10BBBBB00500.33BB00
456od3_Z_DG10_DT11BBBBB00710.18BB00
466od3_Z_DT11_DA12BBBBB00710.25BB00
476od3_Z_DA12_DT13B-ABA01630.20BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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