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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Human TCF4 C-terminal bHLH domain in Complex with 11-bp Oligonucleotide Containing E-box Sequence

Results of the assignment of 18 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016od4_X_DT2_DA3B12BB04130.41BB04
026od4_X_DA3_DC4BBBBB01860.16BB01
036od4_X_DC4_DA5BBBBB00380.32BB00
046od4_X_DA5_DC6BBBBB00810.16BB00
056od4_X_DC6_DG7BBBBB00670.37BB00
066od4_X_DG7_DT8BBBBB00690.27BB00
076od4_X_DT8_DG9B12BB04590.20BB04
086od4_X_DG9_DT10BBBBB00730.26BB00
096od4_X_DT10_DA11NANNANT01.96IC05
106od4_W_DT2_DA3BB2BB07110.44BB07
116od4_W_DA3_DC4BBBBB01830.17BB01
126od4_W_DC4_DA5BBBBB00380.32BB00
136od4_W_DA5_DC6BBBBB00730.17BB00
146od4_W_DC6_DG7BBBBB00530.40BB00
156od4_W_DG7_DT8BBBBB01730.23BB01
166od4_W_DT8_DG9B12BB04380.24BB04
176od4_W_DG9_DT10BBBBB00610.33BB00
186od4_W_DT10_DA11NANNANT00.58BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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