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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of an adenovirus virus-associated RNA

Results of the assignment of 105 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
0016ol3_C_G26_G27AAAAA08600.29AA08
0026ol3_C_G27_A28AAAAA00940.14AA00
0036ol3_C_A28_C29AAAAA08800.16AA08
0046ol3_C_C29_C30AAAAA00800.21AA00
0056ol3_C_C30_U31AAAAA00810.16AA00
0066ol3_C_U31_C32AAAAA00910.17AA00
0076ol3_C_C32_G33AAAAA00780.13AA00
0086ol3_C_G33_C34AAAAA00920.08AA00
0096ol3_C_C34_A35AAAAA00870.17AA00
0106ol3_C_A35_A36AAAAA08870.20AA08
0116ol3_C_A36_G37NANNANT01.67OP13
0126ol3_C_G37_G38AAAAA00650.27AA00
0136ol3_C_G38_G39AAAAA00760.15AA00
0146ol3_C_G39_U40AA1AA01770.18AA01
0156ol3_C_U40_A41AAAAA08820.24AA08
0166ol3_C_A41_U42AAAAA08860.24AA08
0176ol3_C_U42_C43AAAAA00870.15AA00
0186ol3_C_C43_A44AAAAA00870.13AA00
0196ol3_C_A44_U45AAAAA00760.15AA00
0206ol3_C_U45_G46AA2AA12750.39AA12
0216ol3_C_G46_G47AAAAA00940.11AA00
0226ol3_C_G47_C48AAAAA00890.10AA00
0236ol3_C_C48_G49AAAAA00900.12AA00
0246ol3_C_G49_G50AAAAA00810.17AA00
0256ol3_C_G50_A51AA1AA01510.28AA01
0266ol3_C_A51_C52AAAAA08770.27AA08
0276ol3_C_C52_G53AAAAA00830.16AA00
0286ol3_C_G53_A54AAAAA00780.20AA00
0296ol3_C_A54_C55AAAAA00710.11AA00
0306ol3_C_C55_C56AA1AA01630.24AA01
0316ol3_C_C56_G57AAAAA08770.29AA08
0326ol3_C_G57_G58AA1AA01160.47AA01
0336ol3_C_G58_G59A-BAB05460.32AB05
0346ol3_C_U61_U62AAAAA00940.09AA00
0356ol3_C_U62_C63AAAAA00840.19AA00
0366ol3_C_C63_G64AA1AA01840.17AA01
0376ol3_C_G64_A65NANNANT00.48OP05
0386ol3_C_A65_A66NANNANT00.70IC06
0396ol3_C_A66_C67NANNANT00.98OP07
0406ol3_C_C67_C68AAAAA08170.51AA08
0416ol3_C_C68_C69AAAAA00640.29AA00
0426ol3_C_C69_C70AAAAA00420.21AA00
0436ol3_C_C70_G71AAAAA00850.13AA00
0446ol3_C_G71_G72AAAAA00630.26AA00
0456ol3_C_G72_A73AAAAA00930.12AA00
0466ol3_C_A73_U74AAAAA00800.20AA00
0476ol3_C_U74_C75AAAAA00880.20AA00
0486ol3_C_C75_C76AA1AA01740.21AA01
0496ol3_C_C76_G77AAAAA08690.28AA08
0506ol3_C_G77_G78AAAAA00830.15AA00
0516ol3_C_G78_C79AAAAA00900.10AA00
0526ol3_C_C79_C80AAAAA00760.30AA00
0536ol3_C_C80_G81AAAAA00840.14AA00
0546ol3_C_G81_U82AAAAA00490.33AA00
0556ol3_C_U82_C83NANNANT00.34AA10
0566ol3_C_C83_C84AAAAA08740.24AA08
0576ol3_C_C84_G85AAAAA00710.14AA00
0586ol3_C_G85_C86AAAAA00790.20AA00
0596ol3_C_C86_C87AAAAA00730.22AA00
0606ol3_C_C87_G88AA1AA10710.22AA10
0616ol3_C_G88_U89AAAAA08700.26AA08
0626ol3_C_U89_G90AAAAA00820.12AA00
0636ol3_C_G90_A91AAAAA00750.17AA00
0646ol3_C_A91_U92AAAAA08540.18AA08
0656ol3_C_U92_C93AAAAA08430.45AA08
0666ol3_C_C93_C94NANNANT01.52OP05
0676ol3_C_C94_A95AAAAA00960.13AA00
0686ol3_C_A95_U96AAAAA00810.18AA00
0696ol3_C_U96_G97AAAAA00520.39AA00
0706ol3_C_G97_C98AAAAA00900.15AA00
0716ol3_C_C98_G99AAAAA00900.10AA00
0726ol3_C_G99_G100AAAAA00840.16AA00
0736ol3_C_G100_U101AAAAA00750.21AA00
0746ol3_C_A103_C104AAAAA00480.30AA00
0756ol3_C_C104_C105AAAAA00800.17AA00
0766ol3_C_C105_G106NANNANT00.40AA06
0776ol3_C_G106_C107AAAAA08700.30AA08
0786ol3_C_C107_C108AAAAA00670.28AA00
0796ol3_C_C108_C109AAAAA00550.23AA00
0806ol3_C_C109_G110AAAAA00870.15AA00
0816ol3_C_G110_C111AAAAA00720.13AA00
0826ol3_C_C111_G112AA1AA01770.26AA01
0836ol3_C_G112_U113AAAAA08680.30AA08
0846ol3_C_U113_G114AAAAA00910.11AA00
0856ol3_C_C116_G117A-BAB05930.13AB05
0866ol3_C_G117_A118NANNANT00.92ZZ2S
0876ol3_C_A118_A119NANNANT01.26OP13
0886ol3_C_A119_C120AAAAA00440.31AA00
0896ol3_C_C120_C121AAAAA00900.19AA00
0906ol3_C_C121_C122AAAAA00830.12AA00
0916ol3_C_C122_A123A-BAB05840.17AB05
0926ol3_C_A123_G124NANNANT00.94BA16
0936ol3_C_G124_G125AAAAA00730.21AA00
0946ol3_C_G125_U126AAAAA00820.16AA00
0956ol3_C_U126_G127NANNANT00.95BB2S
0966ol3_C_G127_U128NANNANT01.58OPS1
0976ol3_C_U128_G129AAAAA00850.17AA00
0986ol3_C_G129_C130AAAAA00810.15AA00
0996ol3_C_C130_G131AAAAA00910.12AA00
1006ol3_C_G131_A132AAAAA00840.16AA00
1016ol3_C_A132_G133AAAAA00870.19AA00
1026ol3_C_G133_G134AA1AA01830.18AA01
1036ol3_C_G134_U135AA1AA11630.45AA11
1046ol3_C_U135_C136AAAAA08840.24AA08
1056ol3_C_C136_C137AAAAA00930.14AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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