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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 3 min

Results of the assignment of 39 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016oy5_G_DC3_DC4NANNANT00.47BB17
026oy5_G_DC4_DG5NANNANT00.60BB13
036oy5_G_DG5_DC6NANNANT00.79BB02
046oy5_G_DC6_DA7BBBBB00670.34BB00
056oy5_G_DA7_DT8miBBB10680.24BB10
066oy5_G_DT8_DC9BBBBB00730.20BB00
076oy5_G_DC9_DA10NANNANT00.26BB10
086oy5_G_DA10_DG11NANNANT00.39BA08
096oy5_G_DG11_DA12NANNANT00.48BA10
106oy5_G_DA12_DG13AAAAA00770.27AA00
116oy5_G_DG13_DC14NANNANT00.73OP06
126oy5_G_DC14_DC15AAAAA00440.33AA00
136oy5_G_DC15_DC16AAAAA04950.26AA04
146oy5_G_DC16_DA17AAAAA00710.21AA00
156oy5_G_DA17_DA18AAAAA04700.27AA04
166oy5_G_DA18_DA19NANNANT00.92AB02
176oy5_G_DA19_DA20NANNANT01.28OP20
186oy5_G_DA20_DT21NANNANT01.39OP19
196oy5_H_DA1_DT2NANNANT01.27AAS1
206oy5_H_DT2_DA3NANNANT00.90OP13
216oy5_H_DA3_DA4NANNANT00.40BB16
226oy5_H_DA4_DT5BBBBB00590.39BB00
236oy5_H_DT5_DG6NANNANT00.50OP20
246oy5_H_DG6_DG7NANNANT02.17OP19
256oy5_H_DG7_DG8NANNANT00.98IC05
266oy5_H_DG8_DA9NANNANT00.67BB13
276oy5_H_DA9_DG10NANNANT00.64BB02
286oy5_H_DG10_DC11NANNANT00.89BB11
296oy5_H_DC15_DT16NANNANT00.76BA08
306oy5_H_DT16_DC17NANNANT00.42AB02
316oy5_H_DC17_DT18A-BAB05360.23AB05
326oy5_H_DT18_DG19BBBBB00890.19BB00
336oy5_H_DG19_DA20BBBBB00390.18BB00
346oy5_H_DA20_DT21B12BB04170.32BB04
356oy5_H_DT21_DG22NANNANT00.49BB17
366oy5_H_DG22_DC23NANNANT00.62AB02
376oy5_H_DC23_DA24BB1BB17370.39BB17
386oy5_H_DA24_DG25NANNANT00.64BB04
396oy5_I_GTP7_G8AAAAA08860.21AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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