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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
X-ray crystal structure of a bacterial reiterative transcription complex of pyrG promoter at 5 min

Results of the assignment of 41 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016oy6_G_DC3_DC4miBBB10400.41BB10
026oy6_G_DC4_DT5A-BAB01140.36AB01
036oy6_G_DT5_DG6NANNANT00.72BB02
046oy6_G_DG6_DC7BBBBB0180.59BB01
056oy6_G_DC7_DA8B12BB04890.20BB04
066oy6_G_DA8_DT9miBBB10770.16BB10
076oy6_G_DT9_DC10BBBBB00740.26BB00
086oy6_G_DC10_DA11NANNANT00.26BB10
096oy6_G_DA11_DG12NANNANT00.45BA10
106oy6_G_DG12_DA13AAAAA04550.39AA04
116oy6_G_DA13_DG14NANNANT00.83OP06
126oy6_G_DG14_DC15AAAAA00490.35AA00
136oy6_G_DC15_DC16AAAAA00850.19AA00
146oy6_G_DC16_DC17AAAAA04930.20AA04
156oy6_G_DC17_DA18AA1AA10250.46AA10
166oy6_G_DA18_DA19NANNANT00.95AA04
176oy6_G_DA19_DA20NANNANT02.64IC04
186oy6_G_DA20_DA21NANNANT01.25OP19
196oy6_H_DT1_DA2NANNANT01.01IC05
206oy6_H_DA2_DT3NANNANT00.94OP13
216oy6_H_DT3_DA4BB1BB16330.33BB16
226oy6_H_DA4_DA5BBBBB00800.26BB00
236oy6_H_DA5_DT6NANNANT00.57OP20
246oy6_H_DT6_DG7NANNANT01.81OP21
256oy6_H_DG7_DG8NANNANT01.06IC05
266oy6_H_DG8_DG9NANNANT00.56BB00
276oy6_H_DG9_DA10miBBB10220.55BB10
286oy6_H_DA10_DG11NANNANT01.07BB11
296oy6_H_DT15_DC16NANNANT00.68BB15
306oy6_H_DC16_DT17NANNANT00.45AB02
316oy6_H_DT17_DG18A-BAB01870.21AB01
326oy6_H_DG18_DA19BBBBB00720.18BB00
336oy6_H_DA19_DT20BBBBB00550.23BB00
346oy6_H_DT20_DG21B12BB04390.21BB04
356oy6_H_DG21_DC22B-ABA01230.36BA01
366oy6_H_DC22_DA23NANNANT00.67AB02
376oy6_H_DA23_DG24BBBBB00210.33BB00
386oy6_H_DG24_DG25B12BB04170.49BB04
396oy6_I_GTP5_G6NANNANT00.65OP12
406oy6_I_G6_G7AA2AA12590.52AA12
416oy6_I_G7_G8AAAAA00820.22AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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