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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of Mus musculus (Mm) Endonuclease V in complex with a 23mer RNA oligo containing an inosine after a 15 min soak in 10 mM Mn2+

Results of the assignment of 26 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016ozn_C_A.A11_U.A12AAAAA00690.29AA00
026ozn_C_U.A12_A13AAAAA08810.28AA08
036ozn_C_U.B12_A13AAAAA08800.28AA08
046ozn_C_A13_U14AAAAA08850.21AA08
056ozn_C_U14_G15AAAAA00500.19AA00
066ozn_C_G15_C16AAAAA00950.10AA00
076ozn_C_C16_A17AAAAA00940.12AA00
086ozn_C_A17_U18AAAAA00760.27AA00
096ozn_C_U18_G19AAAAA00800.14AA00
106ozn_C_G19_C20AAAAA00900.19AA00
116ozn_C_C20_A21AAAAA00900.08AA00
126ozn_C_A21_U22AAAAA00920.11AA00
136ozn_C_U22_U23AAAAA00680.25AA00
146ozn_D_A.A11_U.A12AAAAA00620.33AA00
156ozn_D_U.A12_A13AAAAA08900.23AA08
166ozn_D_U.B12_A13AAAAA08890.22AA08
176ozn_D_A13_U14AAAAA08860.23AA08
186ozn_D_U14_G15AAAAA00580.20AA00
196ozn_D_G15_C16AAAAA00950.09AA00
206ozn_D_C16_A17AAAAA00950.13AA00
216ozn_D_A17_U18AAAAA00750.29AA00
226ozn_D_U18_G19AAAAA00820.15AA00
236ozn_D_G19_C20AAAAA00920.14AA00
246ozn_D_C20_A21AAAAA00910.11AA00
256ozn_D_A21_U22AAAAA00930.15AA00
266ozn_D_U22_U23AAAAA08630.26AA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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