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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of ternary DNA complex "FX2" containing E. coli Fis and phage lambda Xis

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016p0s_C_DA1_DA2BBBBB00540.17BB00
026p0s_C_DA2_DT3BBBBB00830.21BB00
036p0s_C_DT3_DT4BBBBB00600.28BB00
046p0s_C_DT4_DT5BBBBB00510.23BB00
056p0s_C_DT5_DT6BBBBB01840.19BB01
066p0s_C_DT6_DG7BBBBB00580.33BB00
076p0s_C_DG7_DC8BBBBB00280.33BB00
086p0s_C_DC8_DA9B-ABA08920.18BA08
096p0s_C_DA9_DT10AA1AA01290.37AA01
106p0s_C_DT10_DA11A-BAB03630.40AB03
116p0s_C_DA11_DA12B12BB04330.19BB04
126p0s_C_DA12_DA13B12BB04530.18BB04
136p0s_C_DA13_DA14BBBBB00800.13BB00
146p0s_C_DA14_DA15BBBBB01960.17BB01
156p0s_C_DA15_DA16BBBBB01910.15BB01
166p0s_C_DA16_DC17B-ABA01310.19BA01
176p0s_C_DC17_DA18A-BAB01640.22AB01
186p0s_C_DA18_DG19B-ABA05750.24BA05
196p0s_C_DG19_DA20A-BAB03750.41AB03
206p0s_C_DA20_DC21BBBBB00610.40BB00
216p0s_C_DC21_DT22B12BB04170.28BB04
226p0s_C_DT22_DA23BBBBB00700.21BB00
236p0s_C_DA23_DC24BBBBB01440.23BB01
246p0s_C_DC24_DA25BBBBB00310.26BB00
256p0s_C_DA25_DT26BBBBB01800.15BB01
266p0s_C_DT26_DT27B-ABA05670.21BA05
276p0s_D_DA1_DA2BBBBB00880.21BB00
286p0s_D_DA2_DT3BBBBB01700.23BB01
296p0s_D_DT3_DG4BBBBB00290.22BB00
306p0s_D_DG4_DT5BBBBB00750.16BB00
316p0s_D_DT5_DA6BBBBB00530.27BB00
326p0s_D_DA6_DG7BBBBB01730.24BB01
336p0s_D_DG7_DT8BBBBB00560.26BB00
346p0s_D_DT8_DC9B-ABA10880.24BA10
356p0s_D_DC9_DT10A-BAB05110.19AB05
366p0s_D_DT10_DG11BBBBB01660.22BB01
376p0s_D_DG11_DT12BBBBB00540.28BB00
386p0s_D_DT12_DT13BBBBB00330.24BB00
396p0s_D_DT13_DT14BBBBB00940.12BB00
406p0s_D_DT14_DT15BBBBB00880.16BB00
416p0s_D_DT15_DT16BBBBB00830.18BB00
426p0s_D_DT16_DT17B-ABA01780.13BA01
436p0s_D_DT17_DA18A-BAB01840.12AB01
446p0s_D_DA18_DT19BBBBB01530.23BB01
456p0s_D_DT19_DG20A-BAB03860.33AB03
466p0s_D_DG20_DC21BBBBB00880.22BB00
476p0s_D_DC21_DA22B12BB04550.16BB04
486p0s_D_DA22_DA23BBBBB00820.21BB00
496p0s_D_DA23_DA24BBBBB01920.15BB01
506p0s_D_DA24_DA25BBBBB01620.24BB01
516p0s_D_DA25_DT26BBBBB00510.27BB00
526p0s_D_DT26_DT27B-ABA01400.12BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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