DNATCO v3.1: results

Crystal structure of ternary DNA complex " FX(1-2)-2Xis" containing E. coli Fis and phage lambda Xis

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.

step number	Step name	CANA	NtC	confal	rmsd
01	6p0u_C_DA1_DA2	B12	BB04	80	0.16	BB04
02	6p0u_C_DA2_DT3	B-A	BA05	46	0.21	BA05
03	6p0u_C_DT3_DG4	BBB	BB01	23	0.28	BB01
04	6p0u_C_DG4_DT5	B-A	BA05	14	0.24	BA05
05	6p0u_C_DT5_DT6	A-B	AB01	30	0.29	AB01
06	6p0u_C_DT6_DG7	BBB	BB00	74	0.26	BB00
07	6p0u_C_DG7_DT8	B-A	BA05	69	0.15	BA05
08	6p0u_C_DT8_DG9	B-A	BA10	20	0.39	BA10
09	6p0u_C_DG9_DT10	AA1	AA01	25	0.39	AA01
10	6p0u_C_DT10_DT11	A-B	AB01	9	0.40	AB01
11	6p0u_C_DT11_DT12	BBB	BB00	65	0.22	BB00
12	6p0u_C_DT12_DT13	BBB	BB00	71	0.23	BB00
13	6p0u_C_DT13_DT14	BBB	BB00	83	0.23	BB00
14	6p0u_C_DT14_DA15	BBB	BB00	67	0.28	BB00
15	6p0u_C_DA15_DA16	B12	BB04	62	0.20	BB04
16	6p0u_C_DA16_DC17	B-A	BA01	59	0.17	BA01
17	6p0u_C_DC17_DA18	A-B	AB01	29	0.19	AB01
18	6p0u_C_DA18_DG19	B-A	BA05	40	0.23	BA05
19	6p0u_C_DG19_DA20	BBB	BB00	10	0.34	BB00
20	6p0u_C_DA20_DC21	B-A	BA05	58	0.33	BA05
21	6p0u_C_DC21_DT22	NAN	NANT	0	0.46	BA08
22	6p0u_C_DT22_DA23	BBB	BB00	73	0.28	BB00
23	6p0u_C_DA23_DC24	BBB	BB01	74	0.22	BB01
24	6p0u_C_DC24_DA25	BBB	BB00	39	0.21	BB00
25	6p0u_C_DA25_DT26	BBB	BB01	80	0.17	BB01
26	6p0u_C_DT26_DT27	B-A	BA01	47	0.14	BA01
27	6p0u_D_DA1_DA2	BBB	BB00	73	0.19	BB00
28	6p0u_D_DA2_DT3	BBB	BB01	59	0.28	BB01
29	6p0u_D_DT3_DG4	BBB	BB00	73	0.23	BB00
30	6p0u_D_DG4_DT5	BBB	BB00	82	0.17	BB00
31	6p0u_D_DT5_DA6	B12	BB04	69	0.21	BB04
32	6p0u_D_DA6_DG7	BBB	BB00	82	0.29	BB00
33	6p0u_D_DG7_DT8	B12	BB04	58	0.38	BB04
34	6p0u_D_DT8_DC9	B-A	BA10	83	0.24	BA10
35	6p0u_D_DC9_DT10	AAA	AA00	50	0.21	AA00
36	6p0u_D_DT10_DG11	A-B	AB01	12	0.35	AB01
37	6p0u_D_DG11_DT12	BBB	BB00	36	0.27	BB00
38	6p0u_D_DT12_DT13	BBB	BB00	91	0.21	BB00
39	6p0u_D_DT13_DA14	B12	BB04	40	0.26	BB04
40	6p0u_D_DA14_DA15	BBB	BB00	60	0.22	BB00
41	6p0u_D_DA15_DA16	BBB	BB01	49	0.27	BB01
42	6p0u_D_DA16_DA17	BBB	BB01	86	0.22	BB01
43	6p0u_D_DA17_DA18	BBB	BB01	81	0.22	BB01
44	6p0u_D_DA18_DC19	B-A	BA05	37	0.20	BA05
45	6p0u_D_DC19_DA20	NAN	NANT	0	0.34	AA01
46	6p0u_D_DA20_DC21	NAN	NANT	0	0.48	AB04
47	6p0u_D_DC21_DA22	B12	BB04	19	0.20	BB04
48	6p0u_D_DA22_DA23	B-A	BA09	22	0.47	BA09
49	6p0u_D_DA23_DC24	NAN	NANT	0	0.57	AA02
50	6p0u_D_DC24_DA25	BBB	BB00	31	0.28	BB00
51	6p0u_D_DA25_DT26	BBB	BB01	83	0.15	BB01
52	6p0u_D_DT26_DT27	B-A	BA01	40	0.18	BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

step:
Table of conformers

δ

ε

ζ

α1

β1

γ1

δ1

χ

χ1

NCCN

NN

CC

step_torsions

ntC_average

Δ torsions

torsion scores

comments step confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show

Sigma scaling factor

Color by conformation group (pyramids)

Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N

Click the Table/Summary/Similar tabs for more details.
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