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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of ternary DNA complex " FX(1-2)-2Xis" containing E. coli Fis and phage lambda Xis

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016p0u_C_DA1_DA2B12BB04800.16BB04
026p0u_C_DA2_DT3B-ABA05460.21BA05
036p0u_C_DT3_DG4BBBBB01230.28BB01
046p0u_C_DG4_DT5B-ABA05140.24BA05
056p0u_C_DT5_DT6A-BAB01300.29AB01
066p0u_C_DT6_DG7BBBBB00740.26BB00
076p0u_C_DG7_DT8B-ABA05690.15BA05
086p0u_C_DT8_DG9B-ABA10200.39BA10
096p0u_C_DG9_DT10AA1AA01250.39AA01
106p0u_C_DT10_DT11A-BAB0190.40AB01
116p0u_C_DT11_DT12BBBBB00650.22BB00
126p0u_C_DT12_DT13BBBBB00710.23BB00
136p0u_C_DT13_DT14BBBBB00830.23BB00
146p0u_C_DT14_DA15BBBBB00670.28BB00
156p0u_C_DA15_DA16B12BB04620.20BB04
166p0u_C_DA16_DC17B-ABA01590.17BA01
176p0u_C_DC17_DA18A-BAB01290.19AB01
186p0u_C_DA18_DG19B-ABA05400.23BA05
196p0u_C_DG19_DA20BBBBB00100.34BB00
206p0u_C_DA20_DC21B-ABA05580.33BA05
216p0u_C_DC21_DT22NANNANT00.46BA08
226p0u_C_DT22_DA23BBBBB00730.28BB00
236p0u_C_DA23_DC24BBBBB01740.22BB01
246p0u_C_DC24_DA25BBBBB00390.21BB00
256p0u_C_DA25_DT26BBBBB01800.17BB01
266p0u_C_DT26_DT27B-ABA01470.14BA01
276p0u_D_DA1_DA2BBBBB00730.19BB00
286p0u_D_DA2_DT3BBBBB01590.28BB01
296p0u_D_DT3_DG4BBBBB00730.23BB00
306p0u_D_DG4_DT5BBBBB00820.17BB00
316p0u_D_DT5_DA6B12BB04690.21BB04
326p0u_D_DA6_DG7BBBBB00820.29BB00
336p0u_D_DG7_DT8B12BB04580.38BB04
346p0u_D_DT8_DC9B-ABA10830.24BA10
356p0u_D_DC9_DT10AAAAA00500.21AA00
366p0u_D_DT10_DG11A-BAB01120.35AB01
376p0u_D_DG11_DT12BBBBB00360.27BB00
386p0u_D_DT12_DT13BBBBB00910.21BB00
396p0u_D_DT13_DA14B12BB04400.26BB04
406p0u_D_DA14_DA15BBBBB00600.22BB00
416p0u_D_DA15_DA16BBBBB01490.27BB01
426p0u_D_DA16_DA17BBBBB01860.22BB01
436p0u_D_DA17_DA18BBBBB01810.22BB01
446p0u_D_DA18_DC19B-ABA05370.20BA05
456p0u_D_DC19_DA20NANNANT00.34AA01
466p0u_D_DA20_DC21NANNANT00.48AB04
476p0u_D_DC21_DA22B12BB04190.20BB04
486p0u_D_DA22_DA23B-ABA09220.47BA09
496p0u_D_DA23_DC24NANNANT00.57AA02
506p0u_D_DC24_DA25BBBBB00310.28BB00
516p0u_D_DA25_DT26BBBBB01830.15BB01
526p0u_D_DT26_DT27B-ABA01400.18BA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

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Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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