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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Pre-catalytic ternary complex of human DNA Polymerase Mu with 1-nt gapped substrate containing template 8OG and bound incoming dAMPNPP

Results of the assignment of 14 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016p1n_T_DC1_DG2A-BAB01380.22AB01
026p1n_T_DG2_DG3B-ABA05820.19BA05
036p1n_T_DG3_DC4BBBBB00110.26BB00
046p1n_T_DC4_8OG5NANNANT01.36OP05
056p1n_T_8OG5_DT6SYNBBS1530.48BBS1
066p1n_T_DT6_DA7B-ABA10660.42BA10
076p1n_T_DA7_DC8A-BAB05150.17AB05
086p1n_T_DC8_DG9BBBBB00150.47BB00
096p1n_P_DC1_DG2AAAAA00910.17AA00
106p1n_P_DG2_DT3AAAAA00910.20AA00
116p1n_P_DT3_DA4AAAAA00620.25AA00
126p1n_D_DG1_DC2B-ABA05270.36BA05
136p1n_D_DC2_DC3A-BAB01530.31AB01
146p1n_D_DC3_DG4BBBBB00890.20BB00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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