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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of human DNA polymerase eta complexed with 8OA in the template base paired with incoming non-hydrolyzable TTP

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016pl8_T_DA2_DT3NANNANT02.30OP19
026pl8_T_DA5_DT6NANNANT00.34BB13
036pl8_T_DT6_DG7NANNANT00.52AA00
046pl8_T_DG7_DA8A-BAB01280.29AB01
056pl8_T_DA8_DC9B-ABA05870.23BA05
066pl8_T_DC9_DG10miBBB15200.52BB15
076pl8_T_DG10_DC11BBBBB00790.16BB00
086pl8_T_DC11_DT12B-ABA05680.12BA05
096pl8_P_DA1_DG2BBBBB00550.32BB00
106pl8_P_DG2_DC3BBBBB00740.27BB00
116pl8_P_DC3_DG4BBBBB00770.20BB00
126pl8_P_DG4_DT5BBBBB00770.27BB00
136pl8_P_DT5_DC6BBBBB01910.16BB01
146pl8_P_DC6_DA7B-ABA05470.29BA05
156pl8_P_DA7_DT8A-BAB03600.39AB03

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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