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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Structure of the standard kink turn HmKt-7 variant A2bm6A.

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016q8v_A_G1_G2AAAAA00560.17AA00
026q8v_A_G2_C3AAAAA00870.18AA00
036q8v_A_C3_G4AAAAA00880.22AA00
046q8v_A_G4_A5NANNANT01.01BB2S
056q8v_A_A5_A6NANNANT00.59OP21
066q8v_A_A6_G7NANNANT00.57OP20
076q8v_A_A9_C10AAAAA08580.43AA08
086q8v_A_C10_C11AAAAA00830.18AA00
096q8v_A_G12_G13AAAAA00830.16AA00
106q8v_A_G13_G14AAAAA00430.43AA00
116q8v_A_G14_G15NANNANT00.38AB05
126q8v_A_G15_A16OPNOP22140.77OP22
136q8v_A_A16_G17OPNOP24970.17OP24
146q8v_A_G17_C18AAAAA00880.14AA00
156q8v_A_C18_C19AAAAA00690.19AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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