Click the Table/Summary/Similar tabs for more details.
Center view on step or molecule.
Show reference model altloc

Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Structure of the standard kink turn HmKt-7 variant A2bm6A.

Results of the assignment of 15 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

Your browser does not support the HTML5 canvas tag.
Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016q8v_A_G1_G2AAAAA00570.22AA00
026q8v_A_G2_C3AAAAA00870.14AA00
036q8v_A_C3_G4AAAAA00880.16AA00
046q8v_A_G4_A5NANNANT01.01BB2S
056q8v_A_A5_A6NANNANT00.60OP21
066q8v_A_A6_G7NANNANT00.51OP20
076q8v_A_A9_C10AAAAA08590.38AA08
086q8v_A_C10_C11AAAAA00830.17AA00
096q8v_A_G12_G13AAAAA00830.12AA00
106q8v_A_G13_G14AAAAA00450.38AA00
116q8v_A_G14_G15NANNANT00.47AB05
126q8v_A_G15_A16NANNANT00.62IC05
136q8v_A_A16_G17NANNANT01.02BA16
146q8v_A_G17_C18AAAAA00880.12AA00
156q8v_A_C18_C19AAAAA00690.12AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

Show



Color by conformation group (pyramids)

group
visible

Color by NtC (balls)

A

A-B

B-A

B

IC

OPN

Z

N