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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016qcv_M_G1_A2NANNANT00.95OP26
026qcv_M_A2_A3NANNANT00.79AB2S
036qcv_M_A3_U4NANNANT00.42AAS1
046qcv_M_U4_G5NANNANT00.42OP20
056qcv_M_G5_C6NANNANT00.69BA17
066qcv_M_C6_U7NANNANT00.53AA09
076qcv_M_U7_A8NANNANT01.71OP31
086qcv_M_A8_U9NANNANT01.72ZZ01
096qcv_M_U9_A10NANNANT01.19OP16
106qcv_M_A10_A11AAAAA08760.29AA08
116qcv_M_A11_U12AAAAA00890.12AA00
126qcv_M_U12_A13AAAAA00930.15AA00
136qcv_M_A13_G14AAAAA08900.22AA08
146qcv_R_A2_U3AAAAA08650.27AA08
156qcv_R_U3_A4ZZZZZ01700.17ZZ01
166qcv_R_A4_C5NANNANT00.49OP21
176qcv_R_C5_C6OPNOP11730.43OP11
186qcv_R_C6_U7AAAAA08930.14AA08
196qcv_R_U7_C8AAAAA08820.16AA08
206qcv_R_C8_U9AAAAA00900.19AA00
216qcv_R_U9_G10SYNAB2S80.51AB2S
226qcv_R_G10_C11NANNANT02.19OP06
236qcv_R_C11_U12A-BAB04830.29AB04
246qcv_R_U12_U13NANNANT00.72OP21
256qcv_R_U13_C14NANNANT02.02IC01
266qcv_R_C14_U15NANNANT00.40OP20
276qcv_R_U15_G16NANNANT01.34OP16
286qcv_R_G16_C17AAAAA08750.27AA08
296qcv_R_C17_U18AAAAA00690.17AA00
306qcv_R_U18_A19AAwAA01330.33AA01
316qcv_R_A19_U20AAAAA08560.28AA08
326qcv_R_U20_U21NANNANT00.68ZZ01
336qcv_V_A1_G2AAAAA08180.70AA08
346qcv_V_G2_U3AAAAA08750.24AA08
356qcv_V_U3_A4NANNANT00.89AA08
366qcv_V_A4_G5NANNANT00.23AB2S
376qcv_V_G5_U6NANNANT01.20OPS1
386qcv_V_U6_A7NANNANT00.56ZZ02
396qcv_V_A7_A8B-ABA10660.46BA10
406qcv_V_A8_C9AAAAA08570.26AA08
416qcv_V_C9_A10AAAAA00610.39AA00
426qcv_V_A10_A11NANNANT01.61OP01
436qcv_V_A11_G12AAAAA00880.14AA00
446qcv_V_G12_A13AAwAA10790.27AA10
456qcv_V_A13_G14NANNANT00.40AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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