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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
Crystal structure of influenza B polymerase initiation state with capped 14-mer RNA primer and CTP

Results of the assignment of 45 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016qcv_M_G1_A2NANNANT01.38OP16
026qcv_M_A2_A3NANNANT00.82AB2S
036qcv_M_A3_U4NANNANT00.43AAS1
046qcv_M_U4_G5NANNANT00.42OP20
056qcv_M_G5_C6NANNANT00.69BA17
066qcv_M_C6_U7NANNANT00.53AA09
076qcv_M_U7_A8NANNANT01.23OP13
086qcv_M_A8_U9NANNANT01.94AB02
096qcv_M_U9_A10NANNANT01.17OP16
106qcv_M_A10_A11AAAAA08770.27AA08
116qcv_M_A11_U12AAAAA00890.12AA00
126qcv_M_U12_A13AAAAA00930.09AA00
136qcv_M_A13_G14AAAAA08900.22AA08
146qcv_R_A2_U3AAAAA08650.26AA08
156qcv_R_U3_A4ZZZZZ01700.22ZZ01
166qcv_R_A4_C5NANNANT00.47OP21
176qcv_R_C5_C6OPNOP11810.61OP11
186qcv_R_C6_U7AAAAA08930.17AA08
196qcv_R_U7_C8AAAAA08830.23AA08
206qcv_R_C8_U9AAAAA00900.10AA00
216qcv_R_U9_G10SYNAB2S80.43AB2S
226qcv_R_G10_C11NANNANT02.17OP06
236qcv_R_C11_U12A-BAB04820.29AB04
246qcv_R_U12_U13NANNANT00.72OP21
256qcv_R_U13_C14NANNANT02.02IC01
266qcv_R_C14_U15NANNANT00.38OP20
276qcv_R_U15_G16NANNANT01.41OP16
286qcv_R_G16_C17AAAAA08750.36AA08
296qcv_R_C17_U18AAAAA00690.17AA00
306qcv_R_U18_A19AA1AA01410.33AA01
316qcv_R_A19_U20AAAAA08590.26AA08
326qcv_R_U20_U21NANNANT00.67ZZ01
336qcv_V_A1_G2AAAAA08200.64AA08
346qcv_V_G2_U3AAAAA08770.25AA08
356qcv_V_U3_A4NANNANT00.85AA08
366qcv_V_A4_G5NANNANT00.26AB2S
376qcv_V_G5_U6NANNANT00.69IC05
386qcv_V_U6_A7NANNANT01.60OP20
396qcv_V_A7_A8B-ABA10690.42BA10
406qcv_V_A8_C9AAAAA08580.29AA08
416qcv_V_C9_A10AAAAA00620.35AA00
426qcv_V_A10_A11NANNANT01.47OP01
436qcv_V_A11_G12AAAAA00880.19AA00
446qcv_V_G12_A13AA1AA10810.28AA10
456qcv_V_A13_G14NANNANT00.38AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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