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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
The structure of pistol ribozyme bound to magnesium

Results of the assignment of 61 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016r47_A_G2_G3AAAAA08920.21AA08
026r47_A_G3_C4AAAAA08900.15AA08
036r47_A_C4_C5AAAAA08730.33AA08
046r47_A_C5_G6AAAAA00430.33AA00
056r47_A_G6_U7OPNOP05530.31OP05
066r47_A_U7_U8AAAAA00780.22AA00
076r47_A_U8_C9AAAAA00460.34AA00
086r47_A_C9_G10AAAAA00210.23AA00
096r47_A_G10_G11AA1AA01660.27AA01
106r47_A_G11_G12AAAAA08730.32AA08
116r47_A_G12_C13AAAAA00830.19AA00
126r47_A_C13_G14AAAAA00840.13AA00
136r47_A_G14_G15AAAAA00580.16AA00
146r47_A_G15_C16AAAAA08830.29AA08
156r47_A_C16_C17A-BAB05820.17AB05
166r47_A_C17_A18NANNANT00.82BB07
176r47_A_A18_U19NANNANT01.25BA16
186r47_A_U19_A20NANNANT00.53AB03
196r47_A_A20_A21NANNANT00.77BA16
206r47_A_A21_A22AAAAA00560.32AA00
216r47_A_A22_C23NANNANT00.37OP09
226r47_A_C23_A24OPNOP12380.49OP12
236r47_A_A24_G25AAAAA08720.19AA08
246r47_A_G25_C26OPNOP05490.29OP05
256r47_A_C26_C27AAAAA08850.23AA08
266r47_A_C27_C28AAAAA08940.15AA08
276r47_A_C28_U29AAAAA08880.25AA08
286r47_A_U29_C30AAAAA00710.25AA00
296r47_A_C30_A31OPNOP04780.16OP04
306r47_A_A31_G32AAAAA08890.24AA08
316r47_A_G32_A33NANNANT00.70OP02
326r47_A_A33_C34OPNOP05310.48OP05
336r47_A_C34_C35AAAAA00750.26AA00
346r47_A_G37_A38AAAAA00830.15AA00
356r47_A_A38_A39AAAAA04800.16AA04
366r47_A_A39_G40A-BAB05330.72AB05
376r47_A_G40_C41NANNANT00.69OP10
386r47_A_C41_G42AAAAA00730.22AA00
396r47_A_G42_U43AAAAA00570.27AA00
406r47_A_U43_G44AAAAA08430.43AA08
416r47_A_G44_G45AAAAA08690.38AA08
426r47_A_G45_C46AAAAA00680.18AA00
436r47_A_C46_G47AA1AA01250.19AA01
446r47_A_G47_U48AAAAA00750.23AA00
456r47_A_U48_U49AAAAA00790.13AA00
466r47_A_U49_C50AA1AA01790.14AA01
476r47_A_C50_C51AAAAA00800.19AA00
486r47_B_G52_G53AAAAA08840.30AA08
496r47_B_G53_A54AAAAA00750.20AA00
506r47_B_A54_A55AAAAA08800.22AA08
516r47_B_A55_C56AAAAA00930.15AA00
526r47_B_C56_G57AAAAA00740.19AA00
536r47_B_G57_C58AAAAA00870.11AA00
546r47_B_C58_C59AAAAA00940.16AA00
556r47_B_C59_G60AAAAA00680.23AA00
566r47_B_G60_G61NANNANT00.55AA06
576r47_B_G61_U62NANNANT02.37IC03
586r47_B_U62_G63AA1AA06480.32AA06
596r47_B_G63_G64AAAAA08740.26AA08
606r47_B_G64_G65AAAAA08770.27AA08
616r47_B_G65_A66AAAAA00360.33AA00

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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