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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
T. thermophilus RuvC in complex with Holliday junction substrate

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016s16_C_DC1_DA2BBBBB00270.47BB00
026s16_C_DA2_DA3B-ABA08500.40BA08
036s16_C_DA3_DT4A-BAB03620.37AB03
046s16_C_DT4_DC5B-ABA01720.27BA01
056s16_C_DC5_DG6NANNANT00.38AB03
066s16_C_DG6_DG7BBBBB00620.26BB00
076s16_C_DG7_DC8miBBB10500.29BB10
086s16_C_DC8_DT9BBBBB01570.29BB01
096s16_C_DT9_DT10NANNANT01.55OP05
106s16_C_DT10_DT11A-BAB01230.39AB01
116s16_C_DT11_DG12BBBBB00770.17BB00
126s16_C_DG12_DA13B12BB04320.24BB04
136s16_C_DA13_DC14B-ABA01650.16BA01
146s16_C_DC14_DC15A-BAB01760.28AB01
156s16_C_DC15_DT16NANNANT00.99OP04
166s16_C_DT18_DG19NANNANT01.02BB08
176s16_C_DG19_DG20B-ABA13230.38BA13
186s16_C_DG20_DT21NANNANT00.40AB03
196s16_C_DT21_DC22BBBBB00150.31BB00
206s16_C_DC22_DA23miBBB15560.35BB15
216s16_C_DA23_DA24BBBBB00540.31BB00
226s16_C_DA24_DT25NANNANT01.07BA16
236s16_C_DT25_DC26NANNANT00.48BB16
246s16_C_DC26_DG27B12BB04660.19BB04
256s16_C_DG27_DG28BBBBB00240.27BB00
266s16_C_DG28_DC29BBBBB01490.24BB01
276s16_C_DC29_DA30A-BAB03750.20AB03
286s16_C_DA30_DG31B12BB04640.26BB04
296s16_C_DG31_DA32BBBBB00660.25BB00
306s16_C_DA32_DT33B12BB04770.24BB04
316s16_D_DA1_DT2NANNANT00.58BB01
326s16_D_DT2_DC3AAAAA02100.51AA02
336s16_D_DC3_DT4NANNANT00.57BB14
346s16_D_DT4_DG5AAAAA00220.40AA00
356s16_D_DG5_DC6A-BAB01750.22AB01
366s16_D_DC6_DC7BBBBB00430.32BB00
376s16_D_DC7_DG8BBBBB00700.22BB00
386s16_D_DG8_DA9NANNANT00.70BB12
396s16_D_DA9_DT10NANNANT00.85OP21
406s16_D_DT10_DT11BBBBB00360.27BB00
416s16_D_DT11_DC12BBBBB00170.32BB00
426s16_F_DG22_DA23B-ABA10130.49BA10
436s16_F_DA23_DA24AAAAA09540.36AA09
446s16_F_DA24_DA25NANNANT01.31AB02
456s16_F_DA25_DG26miBBB10620.29BB10
466s16_F_DG26_DC27B12BB04160.23BB04
476s16_F_DC27_DC28A-BAB03830.30AB03
486s16_F_DC28_DG29B12BB04440.28BB04
496s16_F_DG29_DA30BBBBB00760.20BB00
506s16_F_DA30_DT31B-ABA01450.24BA01
516s16_F_DT31_DT32AA1AA01390.38AA01
526s16_F_DT32_DG33A-BAB05190.44AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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