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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

T. thermophilus RuvC in complex with Holliday junction substrate

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016s16_C_DC1_DA2BBBBB00260.45BB00
026s16_C_DA2_DA3B-ABA08350.40BA08
036s16_C_DA3_DT4A-BAB03450.37AB03
046s16_C_DT4_DC5B-ABA01720.26BA01
056s16_C_DC5_DG6NANNANT00.38AB03
066s16_C_DG6_DG7BBBBB00610.32BB00
076s16_C_DG7_DC8miBBB10470.28BB10
086s16_C_DC8_DT9BBBBB00100.29BB00
096s16_C_DT9_DT10NANNANT01.75OP05
106s16_C_DT10_DT11A-BAB01230.41AB01
116s16_C_DT11_DG12BBBBB00770.18BB00
126s16_C_DG12_DA13B12BB04320.20BB04
136s16_C_DA13_DC14B-ABA01650.17BA01
146s16_C_DC14_DC15A-BAB01760.31AB01
156s16_C_DC15_DT16NANNANT00.99OP04
166s16_C_DT18_DG19NANNANT01.02BB08
176s16_C_DG19_DG20B-ABA16300.37BA16
186s16_C_DG20_DT21NANNANT00.40AB03
196s16_C_DT21_DC22BBBBB00150.29BB00
206s16_C_DC22_DA23miBBB15440.35BB15
216s16_C_DA23_DA24BBBBB00530.32BB00
226s16_C_DA24_DT25NANNANT01.13BA16
236s16_C_DT25_DC26NANNANT00.44BB16
246s16_C_DC26_DG27B12BB04660.26BB04
256s16_C_DG27_DG28BBBBB00240.32BB00
266s16_C_DG28_DC29BBBBB01460.24BB01
276s16_C_DC29_DA30A-BAB03590.20AB03
286s16_C_DA30_DG31B12BB04640.26BB04
296s16_C_DG31_DA32BBBBB00660.33BB00
306s16_C_DA32_DT33B12BB04770.23BB04
316s16_D_DA1_DT2NANNANT00.49BA05
326s16_D_DT2_DC3AAAAA02100.51AA02
336s16_D_DC3_DT4NANNANT00.41BB14
346s16_D_DT4_DG5AAAAA00210.43AA00
356s16_D_DG5_DC6A-BAB01750.24AB01
366s16_D_DC6_DC7BBBBB00350.35BB00
376s16_D_DC7_DG8BBBBB00700.19BB00
386s16_D_DG8_DA9NANNANT00.70BB12
396s16_D_DA9_DT10NANNANT00.93OP30
406s16_D_DT10_DT11BBBBB00350.28BB00
416s16_D_DT11_DC12BBBBB00170.39BB00
426s16_F_DG22_DA23B-ABA10130.53BA10
436s16_F_DA23_DA24AAAAA09360.36AA09
446s16_F_DA24_DA25NANNANT01.31AB02
456s16_F_DA25_DG26miBBB10590.34BB10
466s16_F_DG26_DC27B12BB04160.20BB04
476s16_F_DC27_DC28BBBBB00220.20BB00
486s16_F_DC28_DG29B12BB04440.31BB04
496s16_F_DG29_DA30BBBBB00760.18BB00
506s16_F_DA30_DT31B-ABA01450.18BA01
516s16_F_DT31_DT32AAwAA01330.38AA01
526s16_F_DT32_DG33A-BAB05190.39AB05

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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