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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

HIV-1 wild-type reverse transcriptase-DNA complex with (-)-FTC-TP

Results of the assignment of 37 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016ujx_P_DG805_DT806A-BAB05150.36AB05
026ujx_P_DT806_DC807BBBBB00810.13BB00
036ujx_P_DC807_DC808BBBBB00400.16BB00
046ujx_P_DC808_DC809BBBBB01740.20BB01
056ujx_P_DC809_DT810B-ABA08710.37BA08
066ujx_P_DT810_DG811BBBBB01220.28BB01
076ujx_P_DG811_DT812BBBBB01180.29BB01
086ujx_P_DT812_DT813A-BAB03150.32AB03
096ujx_P_DT813_DC814miBBB10360.34BB10
106ujx_P_DC814_DG815NANNANT00.34BA08
116ujx_P_DG815_DG816B-ABA01100.34BA01
126ujx_P_DG816_DG817AAwAA01350.48AA01
136ujx_P_DG817_DC818AAAAA08960.14AA08
146ujx_P_DC818_DG819AAAAA00530.23AA00
156ujx_P_DG819_DC820AAAAA00570.19AA00
166ujx_P_DC820_DC821AAAAA00670.29AA00
176ujx_T_DG703_DG704NANNANT00.74BB2S
186ujx_T_DG704_DG705OPNOPS1480.48OPS1
196ujx_T_DG705_DG706AAAAA00560.34AA00
206ujx_T_DG706_DG707AAAAA00500.25AA00
216ujx_T_DG707_DG708AAAAA00920.13AA00
226ujx_T_DG708_DC709AAAAA08790.22AA08
236ujx_T_DC709_DG710AAAAA00690.19AA00
246ujx_T_DG710_DC711AAAAA00550.23AA00
256ujx_T_DC711_DC712NANNANT00.72AA05
266ujx_T_DC712_DC713AAAAA00670.37AA00
276ujx_T_DC713_DG714A-BAB01660.17AB01
286ujx_T_DG714_DA715BBBBB00790.23BB00
296ujx_T_DA715_DA716B-ABA05740.22BA05
306ujx_T_DA716_DC717A-BAB03560.27AB03
316ujx_T_DC717_DA718B12BB04670.24BB04
326ujx_T_DA718_DG719BBBBB00490.29BB00
336ujx_T_DG719_DG720BBBBB00710.37BB00
346ujx_T_DG720_DG721BBBBB00600.28BB00
356ujx_T_DG721_DA722BBBBB00530.26BB00
366ujx_T_DA722_DC723BBBBB00800.18BB00
376ujx_T_DC723_DT724NANNANT00.79BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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