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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

HhaI endonuclease in Complex with Iodine-Labelled DNA

Results of the assignment of 24 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016uke_A_DT1_DC2BBBBB01840.20BB01
026uke_A_DC2_DC3BBBBB00670.26BB00
036uke_A_DC3_DA4BBBBB00580.35BB00
046uke_A_DA4_DA5B-ABA05890.27BA05
056uke_A_DA5_DG6BBBBB00130.25BB00
066uke_A_DG6_DC7BBBBB00900.20BB00
076uke_A_DC7_DG8B-ABA01480.27BA01
086uke_A_DG8_DC9AAAAA00760.25AA00
096uke_A_DC9_DA10NANNANT00.91IC04
106uke_A_DA10_DA11BBBBB00830.21BB00
116uke_A_DA11_DC12BBBBB00810.19BB00
126uke_A_DC12_DG13BB2BB07830.22BB07
136uke_B_DC1_DG2BB2BB07930.23BB07
146uke_B_DG2_5IU3BBBBB00700.18BB00
156uke_B_5IU3_DT4B-ABA05350.17BA05
166uke_B_DT4_DG5A-BAB03650.47AB03
176uke_B_DG5_DC6BB2BB07830.20BB07
186uke_B_DC6_DG7BBBBB00600.39BB00
196uke_B_DG7_DC8B-ABA05800.24BA05
206uke_B_DC8_DT9B-ABA05440.32BA05
216uke_B_DT9_5IU10NANNANT00.57BB03
226uke_B_5IU10_DG11NANNANT00.83BB02
236uke_B_DG11_DG12BBBBB00310.39BB00
246uke_B_DG12_DA13miBBB10750.30BB10

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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