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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
HhaI endonuclease in Complex with DNA in space group P212121 (pH 6.0)

Results of the assignment of 52 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016uki_A_DC1_DT2NANNANT00.33BB16
026uki_A_DT2_DG3BBBBB00830.13BB00
036uki_A_DG3_DT4BBBBB00620.30BB00
046uki_A_DT4_DT5BBBBB01890.22BB01
056uki_A_DT5_DG6BBBBB00320.22BB00
066uki_A_DG6_DC7BBBBB00930.13BB00
076uki_A_DC7_DG8B-ABA01100.32BA01
086uki_A_DG8_DC9AAAAA00510.25AA00
096uki_A_DC9_DT10NANNANT01.36OP08
106uki_A_DT10_DT11BBBBB00730.22BB00
116uki_A_DT11_DG12BBBBB00640.32BB00
126uki_A_DG12_DG13B12BB04780.12BB04
136uki_A_DG13_DA14B12BB04800.20BB04
146uki_B_DT1_DC2BBBBB00740.20BB00
156uki_B_DC2_DC3BBBBB00750.18BB00
166uki_B_DC3_DA4BBBBB00710.27BB00
176uki_B_DA4_DA5BBBBB00730.19BB00
186uki_B_DA5_DG6B12BB04350.44BB04
196uki_B_DG6_DC7BB2BB07670.17BB07
206uki_B_DC7_DG8BBBBB00350.40BB00
216uki_B_DG8_DC9B-ABA0590.28BA05
226uki_B_DC9_DA10A-BAB01620.18AB01
236uki_B_DA10_DA11BBBBB00880.12BB00
246uki_B_DA11_DC12BBBBB01580.22BB01
256uki_B_DC12_DA13BBBBB01210.26BB01
266uki_B_DA13_DG14B-ABA08620.47BA08
276uki_D_DC1_DT2BB1BB16760.33BB16
286uki_D_DT2_DG3BBBBB00830.21BB00
296uki_D_DG3_DT4BBBBB00750.21BB00
306uki_D_DT4_DT5BBBBB00750.24BB00
316uki_D_DT5_DG6BBBBB00640.30BB00
326uki_D_DG6_DC7BBBBB00700.18BB00
336uki_D_DC7_DG8NANNANT00.40BA05
346uki_D_DG8_DC9AAAAA00650.24AA00
356uki_D_DC9_DT10NANNANT01.40OP08
366uki_D_DT10_DT11BBBBB00530.24BB00
376uki_D_DT11_DG12B12BB04500.23BB04
386uki_D_DG12_DG13B12BB04800.16BB04
396uki_D_DG13_DA14BBBBB00170.34BB00
406uki_E_DT1_DC2BBBBB00290.23BB00
416uki_E_DC2_DC3BBBBB00500.21BB00
426uki_E_DC3_DA4B12BB04850.19BB04
436uki_E_DA4_DA5BBBBB00870.18BB00
446uki_E_DA5_DG6B12BB04390.43BB04
456uki_E_DG6_DC7BB2BB07700.16BB07
466uki_E_DC7_DG8NANNANT00.43BB17
476uki_E_DG8_DC9B-ABA01660.15BA01
486uki_E_DC9_DA10A-BAB01780.15AB01
496uki_E_DA10_DA11BBBBB00830.14BB00
506uki_E_DA11_DC12BBBBB00800.19BB00
516uki_E_DC12_DA13BBBBB00710.31BB00
526uki_E_DA13_DG14NANNANT00.43BA08

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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