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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.

©Jiří Černý & Bohdan Schneider

Telomerase Reverse Transcriptase ternary complex, TERT:DNA:dGpCpp

Results of the assignment of 29 detected steps in 1 model(s), can be also downloaded as csv or json file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
016usr_E_DG1_DG2BBwBB16360.57BB16
026usr_E_DG2_DT3NANNANT00.47BA09
036usr_E_DT3_DC4AAwAA11240.46AA11
046usr_E_DC4_DA5NANNANT01.38OP24
056usr_E_DA5_DG6AAwAA06500.38AA06
066usr_E_DG6_DG7AAAAA08900.21AA08
076usr_E_DG7_DT8AAAAA00760.26AA00
086usr_E_DT8_DC9AAAAA00810.21AA00
096usr_E_DC9_DA10AAAAA00940.20AA00
106usr_E_DA10_DG11NANNANT00.38AA08
116usr_E_DG11_DG12NANNANT00.41BA10
126usr_E_DG12_DT13AAAAA00330.30AA00
136usr_E_DT13_DC14AAAAA00680.18AA00
146usr_E_DC14_DA15NANNANT00.26AA03
156usr_F_C1_U2AAAAA00940.15AA00
166usr_F_U2_G3AAAAA08700.32AA08
176usr_F_G3_A4AAAAA00860.14AA00
186usr_F_A4_C5AAAAA00770.28AA00
196usr_F_C5_C6AAAAA00840.20AA00
206usr_F_C6_U7AAAAA00820.17AA00
216usr_F_U7_G8AAAAA00720.21AA00
226usr_F_G8_A9AAAAA00760.17AA00
236usr_F_A9_C10AAwAA06690.33AA06
246usr_F_C10_DC11AAAAA08910.23AA08
256usr_F_DC11_DT12NANNANT00.39AA03
266usr_F_DT12_G13AAwAA06160.45AA06
276usr_F_G13_A14NANNANT00.51AB02
286usr_F_A14_C15AAwAA01270.43AA01
296usr_F_C15_DC16NANNANT00.52AA01

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.
Definition of torsion angles
step:
Table of conformers

δ1ε1ζ1α2β2γ2δ2χ1χ2μNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Download

Results as csv or json file.
Restraints file for Phenix (steps with RMSD <= 0.5Å)
Restraints file for REFMAC (steps with RMSD <= 0.5Å)
Commands file for MMB (steps with RMSD <= 0.5Å)
Best NtC fitted to input structure.

Definitions

Average parameters (csv), esd values (csv), and Cartesian coordinates of conformers.

Download the papers

Description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
Definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
Example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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