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Conformers: ABBIImiBZICOPNSYNN See the J(S)mol wiki for description of applet controls.
DNA POLYMERASE BETA (E.C.2.7.7.7)/DNA COMPLEX, SOAKED IN THE PRESENCE OF ZNCL2

Results of the assignment of 10 detected steps in 1 model(s), can be also downloaded as csv file. Average confal 0, percentile 0.

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Click a row in table or a step in JSmol for analysis of results. Click column headers to sort data.
step numberStep nameCANANtCconfalrmsd
017icr_T_DC2_DA3BBBBB00830.23BB00
027icr_T_DA3_DT4B-ABA01300.28BA01
037icr_T_DT4_DC5NANNANT00.48AB01
047icr_T_DC5_DT6BBBBB00730.20BB00
057icr_T_DT6_DG7NANNANT00.59BB04
067icr_P_DC1_DA2NANNANT00.65BB02
077icr_P_DA2_DG3NANNANT00.43BA05
087icr_P_DG3_DA4B-ABA05150.26BA05
097icr_P_DA4_DT5AAAAA02320.57AA02
107icr_P_DT5_DG6NANNANT00.53BB02

Steps with non-standard or missing atoms have not been assigned, description of conformers is defined in the table.

© Jiří Černý & Bohdan Schneider

Definition of torsion angles
step:
Table of conformers

δεζα1β1γ1δ1χχ1NCCNNNCC
step_torsions
ntC_average
Δ torsions
torsion scores

commentsstep confal = NaN
cartesian RMSD = NaN Å
pseudorotation: NA
details: NA

Similarity of step to class averages

Drag the plot for panning, scroll to zoom, click a point to show superposition in JSmol.

Download

Results (as csv)
Restraints (default edits file)
Best NtC fitted to input structure.

Definition of the conformers as torsion averages (csv) and their esd values (csv) or as their Cartesian coordinates of the conformers

Download the papers:

description of DNATCO server:
Černý et al., Nucleic Acids Research, 44, W284 (2016).
definition of conformers:
Schneider et al., Acta Cryst D, 74, 52-64 (2018).
example of application:
Schneider et al., Genes, 8(10), 278, (2017).

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